Public symposium of the BioHackathon 2016 will be held at the Metabolome campus of the
Institute for Advanced Biosciences
, Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
Symposium video recordings are available at YouTube (Aug 1st, 2016)
Note for speakers
: Please try to leave
few minutes
for Q&A within a given slot (except for lightning talks).
-
8:30 Meet up at the hotel lobby
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9:00 Registration opens / Coffee
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10:00 Introduction and Special Talks
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10:00-10:10
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Introduction to the BioHackathon 2016
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Toshiaki Katayama
Database Center for Life Science, Japan
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10:10-10:30
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Welcome address: Institute for Advanced Biosciences
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Masaru Tomita
Keio University, Japan
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10:30-10:40
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Hacking user interface designs for the effective exploration of biological data
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Kazuharu Arakawa
Keio University, Japan
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10:40-10:50
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Integrated database “
dbTMM
”: integration of large-scale data of genomic prospective cohort study in Tohoku Medical Megabank project toward personalized
healthcare
|
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Soichi Ogishima
Tohoku Medical Megabank Organization, Japan
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10:50 Talks by App Contest Winners
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10:50-11:10
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MetaExplorere
: how to mine data from
metagenomics
experiments
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Francesco Strozzi
Enterome, France
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11:10-11:30
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A Wikidata Powered Model Organism Database of Microbes
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Timothy E Putman
The Scripps Research Institute, USA
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11:30-11:50
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Drug Safety portal
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Juan M Banda
Stanford University, USA
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11:50 Group photo
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12:00 Lunch
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13:00 Talks
(15min + 5min for questions)
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13:00-13:20
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Facilitating semantic alignment of EBI services
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Simon Jupp
European Bioinformatics Institute, UK
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13:20-13:40
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Progress towards a semantic representation of PubChem
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Evan Bolton
National Center for Biotechnology Information, USA
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13:40-14:00
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Impact of schema.org in the semantic web and interoperability of life
sciences
data
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Rafael C Jimenez
ELIXIR, UK
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14:00-14:20
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Providing Model Organism Linked Data From InterMine
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Michel Dumontier
Stanford University School of Medicine, USA
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14:20-14:40
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disgenet2r: the DisGeNET R package
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Núria Queralt Rosinach
Institut Hospital del Mar d'Investigacions Mèdiques, Spain
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14:40-15:00
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Public Data Repositories and Standards in Proteomics
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Eric Deutsch
Institute for Systems Biology, USA
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15:00 Coffee break
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15:30 Talks
(15min + 5min for questions)
|
15:30-15:50
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Dogma conscious and agnostic sharing of high-throughput data
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Hideya Kawaji
RIKEN, Japan
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15:50-16:10
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Resequencing against a pan-genome
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Erik Garrison
Wellcome Trust Sanger Institute, UK
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16:10-16:30
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The Graph Positional Burrows-Wheeler Transform
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Adam
Novak
University of
California, Santa Cruz, USA
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16:30 Lightning talks
(5min each)
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16:30-16:35
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Fast and accurate long read alignment on string graphs
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Hajime Suzuki
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16:35-16:40
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The Global Alliance for Genomics and Health APIs
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Benedict Paten
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16:40-16:45
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Patient matchmaking over a federated network
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Orion Buske
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16:45-16:50
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The Noctua Modeling and other Berkeley BOP software projects
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Seth Carbon
|
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16:50-16:55
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EpiRR
- A registry for reference
epigenomes
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Alessandro Vullo
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16:55-17:00
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Omics
Discovery Index-Discovering and Linking Public Omics Datasets
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Rafael C Jimenez
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17:00-17:05
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Data Linking with GenboreeKB and the Allele Registry
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Lillian Ashmore
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17:05-17:10
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Database Construction and Functional Varidations for the Metabolic Enzymes in Euglena
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Takeshi Kawashima
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17:10-17:15
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GlyTouCan
Design and Development
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Nobuyuki Aoki
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17:15-17:20
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J-
phenome
: a portal of Japanese phenotype data
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Hiroshi Masuya
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17:20-17:25
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Gamification
for establishing biomedical edges in Wikidata.
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Sebastian Burgstaller
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17:25-17:30
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Plant breeding knowledge management using Semantic Web technologies
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Erick Antezana
|
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17:30-17:35
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Finally reusable
data, FRED
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Alexander Garcia
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17:35-17:40
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Toward the Experimental Protocol Description Standard
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Tazro
Ohta
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17:40-17:45
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BioRuby
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Naohisa Goto
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17:45-17:50
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Traversing class-class relationships for constructing a SPARQL query
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Atsuko Yamaguchi
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17:50-17:55
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Question and Answering over Linked Open Data
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Jin-Dong Kim
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18:00 Bus to the
hackathon
venue
-
19:00 Reception party
Live streaming will be available at
This embedded player is no longer available.
Video streaming by Ustream
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